A highly sensitive northern blot assay detects multiple proenkephalin a-like mRNAs in human caudate nucleus and pheochromocytoma

Total RNA from post mortem human caudate nucleus, cerebellum, cerebral cortex and pheochromocytoma tissues has been prepared. Northern blot analysis, using a single-stranded human proenkephalin A antisense probe (cRNA), revealed the existence of two different proenkephalin A-like sequences in the human caudate nucleus and pheochromocytoma RNA extracts of approximately 1400 and 1000 nucleotides in length respectively, whereas no specific RNA bands could be detected in the cortex and only the 1400 nucleotide band was present in the cerebellum. Under highly stringent hybridization conditions, the proenkephalin A-like RNA bands still appear, indicating that the detected RNA species have either identical or a closely related sequence to that of the wellcharacterized human proenkephalin A mRNA sequence.     

我国浙江与日本和我国台湾森林植物区系的联系

作者在“试论浙江省森林植物区系”一文中对我国浙江与日本和我国台湾森林植物区系的联系已作了扼要的说明,本文就是在此基础上作更详尽的论述。浙江省东濒大海,隔海相望,东北方向有日本,其本部岛屿的南端为九州,和浙江北部的纬度相近,具有亚热带气候特征,出现了和浙江相类似的常绿阔叶林和竹林,九     

Short-Term Responders of Non–Small Cell Lung Cancer Patients to EGFR Tyrosine Kinase Inhibitors Display High Prevalence of TP53 Mutations and Primary Resistance Mechanisms

Non–small cell lung cancer (NSCLC) with activating EGFR mutations in exon 19 and 21 typically responds to EGFR tyrosine kinase inhibitors (TKI); however, for some patients, responses last only a few months. The underlying mechanisms of such short responses have not been fully elucidated. Here, we sequenced the genomes of 16 short-term responders (SR) that had progression-free survival (PFS) of less than 6 months on the first-generation EGFR TKI and compared them to 12 long-term responders (LR) that had more than 24 months of PFS. All patients were diagnosed with advanced lung adenocarcinoma and harbored EGFR 19del or L858R mutations before treatment. Paired tumor samples collected before treatment and after relapse (or at the last follow-up) were subjected to targeted next-generation sequencing of 416 cancer-related genes. SR patients were significantly younger than LR patients (P < .001). Collectively, 88% of SR patients had TP53 variations compared to 13% of LR patients (P < .001). Additionally, 37.5% of SR patients carried EGFR amplifications compared to 8% of LR patients. Other potential primary resistance factors were also identified in the pretreatment samples of 12 SR patients (75%), including PTEN loss; BIM deletion polymorphism; and amplifications of EGFR, ERBB2, MET, HRAS, and AKT2. Comparatively, only three LR patients (25%) were detected with EGFR or AKT1 amplifications that could possibly exert resistance. The diverse preexisting resistance mechanisms in SR patients revealed the complexity of defining treatment strategies even for EGFR-sensitive mutations.     

不同时间和空间尺度上台湾水青冈群落谱系结构动态变化

群落谱系结构是了解群落聚群过程的一个基础研究内容。但是现有大部分研究内容集中在群落组成和结构的时空差异,对谱系结构的动态变化研究较少。以浙江省清凉峰国家级自然保护区的国家二级保护植物台湾水青冈(Fagus hayatae)林为研究对象,利用2006年、2011年、2016年3次群落动态调查数据,从10、20、50m的3个空间尺度上研究该群落在10a间的谱系结构动态变化,分析时空尺度对台湾水青冈群落谱系结构的影响,探究调控台湾水青冈群落动态变化的主要因子,为后期台湾水青冈林的保护提供理论基础。研究发现(1)在10a森林动态变化过程中,群落的MPD指数下降,MNTD指数增加。NRI和NTI指数在大尺度上随时间显著增加,但在小尺度上无显著变化。(2)随着空间尺度的增加,上述指数的动态变化趋势均不断增强。以上结果表明,2006—2016年间台湾水青冈群落总体谱系结构表现出不断聚集的趋势,而近缘种的谱系关系则不断疏远;群落谱系结构的聚集趋势随空间尺度的增加而增强。大尺度上的环境过滤和小尺度上的随机过程和种间竞争作用可能是导致该地区台湾水青冈群落谱系结构动态变化的主要生态学过程。     

Comparison of reptile sampling in Iran with pitfall versus double-ended funnel traps

In north Khorasan province, Iran, we compared the effectiveness of two types of traps for collecting reptiles: funnel traps and pitfall traps. Three stations were monitored over three 10-day periods and in total 544 individuals (including 200 recaptures) belonging to 5 species and 4 families of lizards (Lacertidae) were collected. Funnel traps with 280 captures were more efficient than pitfall traps with 264 captures, but the differences between the two traps are not significant. Three species were captured most often in the three different stations respectively: station 1, Bunopus crassicauda (22% relative frequency); station 2, Eremias fasciata (29% relative frequency); and station 3, Trapelus agilis (32% relative frequency). Shannon species richness indices were higher for pitfall than funnel traps (i.e., 1.45 vs. 1.40), but the difference was not significant. Pitfall traps were better for capturing species that search widely for food, while the funnel traps preferentially captured species that climb plants, such as Trapelus agilis. We recommend using both types of trap to capture the various types of species in any one region.     

Analysis of household's energy consumption,forest degradation and plantation requirements in Eastern Tigray,Northern Ethiopia

This study examines the link between household's energy consumption, forest degradation and plantation requirements in Eastern Tigray. Data on household's fuelwood, cow‐dung, kerosene and electricity consumption in the study sites were collected from 557 urban and 114 rural households. Deforestation rate was estimated following FAO and Woody Biomass Inventory Strategy Planning Project (WBISPP's) conversion factors. The study showed that household's fuelwood consumption in urban areas (mean = 2.5 kg/day) was about 52% lower as compared to the rural villages (mean = 3.8 kg/day). The estimated area abandoned annually in the vicinity of urban areas as the result of urban fuelwood consumption varies from 217 ha around Maichew town to 12047 ha around Mekelle City. The estimated area abandoned in rural areas annually as the result of tree cutting for fuelwood also varies from 6.5 ha around Sinkata to 127 ha around Dergajen village. It is therefore recommended that an estimated annual tree plantation of area ranging from 286 ha around Maichew town to 21,684 ha around Mekelle city is required. Moreover, an estimated annual tree plantation of area ranging from 16 ha around Sinkata village to 229 ha around the Dergajen village is required taking the existing population into account.     

Determination of DNA methylation associated with Acer rubrum (red maple) adaptation to metals: analysis of global DNA modifications and methylation‐sensitive amplified polymorphism

Red maple (Acer rubum), a common deciduous tree species in Northern Ontario, has shown resistance to soil metal contamination. Previous reports have indicated that this plant does not accumulate metals in its tissue. However, low level of nickel and copper corresponding to the bioavailable levels in contaminated soils in Northern Ontario causes severe physiological damages. No differentiation between metal‐contaminated and uncontaminated populations has been reported based on genetic analyses. The main objective of this study was to assess whether DNA methylation is involved in A. rubrum adaptation to soil metal contamination. Global cytosine and methylation‐sensitive amplified polymorphism (MSAP) analyses were carried out in A. rubrum populations from metal‐contaminated and uncontaminated sites. The global modified cytosine ratios in genomic DNA revealed a significant decrease in cytosine methylation in genotypes from a metal‐contaminated site compared to uncontaminated populations. Other genotypes from a different metal‐contaminated site within the same region appear to be recalcitrant to metal‐induced DNA alterations even ≥30 years of tree life exposure to nickel and copper . MSAP analysis showed a high level of polymorphisms in both uncontaminated (77%) and metal‐contaminated (72%) populations. Overall, 205 CCGG loci were identified in which 127 were methylated in either outer or inner cytosine. No differentiation among populations was established based on several genetic parameters tested. The variations for nonmethylated and methylated loci were compared by analysis of molecular variance (AMOVA). For methylated loci, molecular variance among and within populations was 1.5% and 13.2%, respectively. These values were low (0.6% for among populations and 5.8% for within populations) for unmethylated loci. Metal contamination is seen to affect methylation of cytosine residues in CCGG motifs in the A. rubrum populations that were analyzed.